VirtualPhotonics.Vts 9.0.0

.NET 6.0 This package targets .NET 6.0. The package is compatible with this framework or higher. .NET Standard 2.0 This package targets .NET Standard 2.0. The package is compatible with this framework or higher.
There is a newer version of this package available.
See the version list below for details. 
dotnet add package VirtualPhotonics.Vts --version 9.0.0                

                    
                

            
NuGet\Install-Package VirtualPhotonics.Vts -Version 9.0.0
This command is intended to be used within the Package Manager Console in Visual Studio, as it uses the NuGet module's version of Install-Package. 
<PackageReference Include="VirtualPhotonics.Vts" Version="9.0.0" />
For projects that support PackageReference, copy this XML node into the project file to reference the package. 
paket add VirtualPhotonics.Vts --version 9.0.0                

                    
                

            
#r "nuget: VirtualPhotonics.Vts, 9.0.0"
#r directive can be used in F# Interactive and Polyglot Notebooks. Copy this into the interactive tool or source code of the script to reference the package. 
// Install VirtualPhotonics.Vts as a Cake Addin
#addin nuget:?package=VirtualPhotonics.Vts&version=9.0.0

// Install VirtualPhotonics.Vts as a Cake Tool
#tool nuget:?package=VirtualPhotonics.Vts&version=9.0.0

The Virtual Photonics Technology Initiative was established by the Laser Microbeam and Medical Program (LAMMP), an NIH/NIBIB Biotechnology Resource Center at the Beckman Laser Institute and Medical Clinic in April 2008.

LAMMP

The Virtual Photonics Technology Initiative has four primary goals:

  • (a) Design and distribute easy-to-use open-source software tools with graphical-user interfaces that simulate the propagation and distribution of optical radiation in cells and tissues.

  • (b) Supply educational resources that provide the appropriate foundation for the proper usage of these computational tools.

  • (c) Develop improved computational models to simulate and design optical diagnostic, imaging, and therapeutic modalities.

  • (d) Stimulate the formation of an active community of 'experts' in Computational Biophotonics interested in offering their expertise and in developing advanced simulation tools to advance this open-source effort.

Virtual Tissue Simulator (VTS)

The primary vehicle for the accomplishment of these goals is the ongoing development of the Virtual Tissue Simulator (VTS). The VTS is being designed as a modular and scalable platform to provide an integrated suite of computational tools to define, solve, visualize, and analyze relevant forward and inverse radiative transport problems in Biomedical Optics. We intend to develop specific Application ToolKits (ATKs) that will provide a user-interface customized for the simulation of issues specific to an application domain. Examples include Small Animal Imaging and Fiber Optic Probe development.

Downloads and Latest Releases

To access the latest release, past releases and downloads, click here.

Getting Started and Documentation

To access getting started instructions in Linux, Mac or Windows, click

For detailed instructions on how to launch the VTS GUI, click here.

Acknowledgement

Use the following citation or acknowledgement in publications or applications that make use of this open source software or underlying technology and research:

"We acknowledge open-source software resources offered by the Virtual Photonics Technology Initiative (https://virtualphotonics.org), at the Beckman Laser Institute, University of California, Irvine."

In addition, for any work that utilizes the Virtual Photonics Monte Carlo software, cite the following publication:

Carole K. Hayakawa, Lisa Malenfant, Janaka C. Ranasinghesagara, David J. Cuccia, Jerome Spanier, Vasan Venugopalan, "MCCL: an open-source software application for Monte Carlo simulations of radiative transport," J. Biomed. Opt. 27(8) 083005 (12 April 2022) https://doi.org/10.1117/1.JBO.27.8.083005

Software

For more information about coding conventions and how to contribute to our Open Source effort see our developer website

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

Virtual Tissue Simulator (VTS) Project.

Copyright ©2022 Virtual Photonics Technology Initiative.

Product Compatible and additional computed target framework versions.
.NET net5.0 was computed.  net5.0-windows was computed.  net6.0 is compatible.  net6.0-android was computed.  net6.0-ios was computed.  net6.0-maccatalyst was computed.  net6.0-macos was computed.  net6.0-tvos was computed.  net6.0-windows was computed.  net7.0 was computed.  net7.0-android was computed.  net7.0-ios was computed.  net7.0-maccatalyst was computed.  net7.0-macos was computed.  net7.0-tvos was computed.  net7.0-windows was computed.  net8.0 was computed.  net8.0-android was computed.  net8.0-browser was computed.  net8.0-ios was computed.  net8.0-maccatalyst was computed.  net8.0-macos was computed.  net8.0-tvos was computed.  net8.0-windows was computed. 
.NET Core netcoreapp2.0 was computed.  netcoreapp2.1 was computed.  netcoreapp2.2 was computed.  netcoreapp3.0 was computed.  netcoreapp3.1 was computed. 
.NET Standard netstandard2.0 is compatible.  netstandard2.1 was computed. 
.NET Framework net461 was computed.  net462 was computed.  net463 was computed.  net47 was computed.  net471 was computed.  net472 was computed.  net48 was computed.  net481 was computed. 
MonoAndroid monoandroid was computed. 
MonoMac monomac was computed. 
MonoTouch monotouch was computed. 
Tizen tizen40 was computed.  tizen60 was computed. 
Xamarin.iOS xamarinios was computed. 
Xamarin.Mac xamarinmac was computed. 
Xamarin.TVOS xamarintvos was computed. 
Xamarin.WatchOS xamarinwatchos was computed. 
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NuGet packages

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Version Downloads Last updated
12.0.0 117 10/2/2024
11.0.0 153 5/30/2024
10.0.0 228 11/3/2023
9.1.0 343 7/27/2023
9.0.0 425 12/21/2022
8.0.0 531 8/29/2022
7.0.0 513 5/25/2022
6.0.0 420 12/7/2021
5.0.0 511 6/18/2021
4.11.0 465 6/10/2021
4.10.0 579 7/18/2020
4.9.0 613 3/24/2020
4.8.0 719 9/16/2019
4.7.0 783 4/3/2019
4.6.0 885 11/23/2018
4.5.0 918 10/10/2018
4.4.0 960 8/31/2018
4.3.0 1,219 7/13/2018
4.2.0 1,156 7/6/2018
4.1.0-alpha 944 5/17/2018
4.0.0 1,118 5/17/2018
3.2.0-alpha 979 5/4/2018
3.1.0-alpha 861 4/27/2018
3.0.0 1,070 4/27/2018
2.5.0 1,108 1/19/2018
2.4.1 1,192 10/25/2017
2.4.0 1,089 9/1/2017
2.3.0 1,029 5/18/2017

* Removed .NET Framework 4.8 from library:  .NET 6.0 now has support for MATLAB interoperability
* Updated all NuGet packages

VTS code changes:
   * Increased unit test code coverage for ComputationalFactory class to 100%
   * Fixed a bug in two-layer SDA solution for Fluence(rho,z,ft) when the independent axis variable is ft (revealed by expanded unit test coverage)

Code clean up to improve readability and maintainability:
   * Removed unused tools folder that contained 7zip and nunit
   * Removed unused local variables
   * Modified variable specifications to use "var" instead of type
   * Make variables "private" and "readonly" where applicable
   * Reduce nesting of "if" statements by inverting the "if" when possible
   * For switch statements based on an Enum, included all cases of the Enum
   * Renamed local variables to longer more descriptive names
   * Removed commented out code and obsolete comments
   * Corrected erroneous comments

Monte Carlo code changes:
   * Bug fixed in perturbation Monte Carlo *transmittance* database specification
   * Modified SimulationStatistics to not tally to NumberOfPhotonsOutTopOfTissue if photon killed by Russian Roulette on collision prior to exit
   * Found continuation line in loadMCResults.m that did not have a "..." at the end of it