BioLib 2.0.0
There is a newer version of this package available.
See the version list below for details.
See the version list below for details.
dotnet add package BioLib --version 2.0.0
NuGet\Install-Package BioLib -Version 2.0.0
This command is intended to be used within the Package Manager Console in Visual Studio, as it uses the NuGet module's version of Install-Package.
<PackageReference Include="BioLib" Version="2.0.0" />
For projects that support PackageReference, copy this XML node into the project file to reference the package.
paket add BioLib --version 2.0.0
The NuGet Team does not provide support for this client. Please contact its maintainers for support.
#r "nuget: BioLib, 2.0.0"
#r directive can be used in F# Interactive and Polyglot Notebooks. Copy this into the interactive tool or source code of the script to reference the package.
// Install BioLib as a Cake Addin
#addin nuget:?package=BioLib&version=2.0.0
// Install BioLib as a Cake Tool
#tool nuget:?package=BioLib&version=2.0.0
The NuGet Team does not provide support for this client. Please contact its maintainers for support.
BioLib
A GUI-less version of Bio .NET library for editing & annotating various microscopy image formats. Supports all bioformats supported images. Integrates with ImageJ, running ImageJ filters & macro functions. Supports Windows, Linux and Mac. Check out the documentation.
Usage
//First call BioImage.Initialize to
//initialize the Bioformats library.
BioImage.Initialize();
//Once initialized you can open OME, ImageJ tiff files, and Bio Tiff files with:
BioImage b = BioImage.OpenFile("file");
//Or if you want to use specifically the OME image reader you can use BioImage.OpenOME
BioImage b = BioImage.OpenOME("file");
//If you are working with a pyramidal image you can open a portion of a tiled image with OpenOME.
//BioImage.OpenOME(string file, int serie, bool tab, bool addToImages, bool tile, int tilex, int tiley, int tileSizeX, int tileSizeY)
//You can specify whether to open in a newtab as well as whether to add the image to
//the Images.images table. As well as specify whether to open as a tile with the specified
//tile X,Y position & tile width & height.
BioImage.OpenOME("file",0,false,false,true,0,0,600,600);
//This will open a portion of the image as a tile and won't add it to the Images table.
//Once you have opened a tiled image with BioImage.OpenOME you can call the
//GetTile(BioImage b, ZCT coord, int serie, int tilex, int tiley, int tileSizeX, int tileSizeY) method
// to quickly get another tile from different portion of the image. For BioGTK & BioLib
Bitmap bm = GetTile(b, new ZCT(0,0,0), 0, 100, 100, 600, 600);
//You can display an image with the ImageView control which can display
// Pyramidal, Whole-Slide, and Series of images.
ImageView v = ImageView.Create(b);
//To get the current coordinate of the ImageView you can call GetCoordinate.
ZCT cord = v.GetCoordinate();
//or to set the current coordinate
v.SetCoordinate(new ZCT(1,1,1));
//To create a point as well as any other ROI type you can call the ROI create methods.
ROI p = ROI.CreatePoint(cord, 0, 0);
ROI rect = ROI.CreateRectangle(cord, 0, 0, 100, 100);
//Usage of Graphics class for 16 & 48 bit images as well as regular bit depth images
//is very similar to System.Graphics.
//We create a new Graphics object by passing the Bitmap for BioGTK & BioLib and BufferInfo for BioCore
Graphics g = Graphics.FromImage(b.Buffers[0]);
//Then we create a pen by passing a ColorS which represent a Color with,
//a higher bit depth (unsigned short) rather than a byte.
g.pen = new Pen(new ColorS(ushort.MaxValue, ushort.MaxValue, ushort.MaxValue));
//Then we can call the familiar methods DrawLine, DrawPolygon, FillPolygon etc.
g.DrawLine(0,0,100,100);
//Finally we dispose the Graphics object.
g.Dispose();
//We can also save the resulting image given the ID of the image in the Images table.
//All images opened with BioImage.OpenFile or BioImage.OpenOME are added to the
//Images.images table with the filename as an ID.
BioImage.SaveFile("file","path");
//To convert between different pixel formats we can call for example To24Bit.
b.To24Bit();
Product | Versions Compatible and additional computed target framework versions. |
---|---|
.NET | net6.0 is compatible. net6.0-android was computed. net6.0-ios was computed. net6.0-maccatalyst was computed. net6.0-macos was computed. net6.0-tvos was computed. net6.0-windows was computed. net7.0 was computed. net7.0-android was computed. net7.0-ios was computed. net7.0-maccatalyst was computed. net7.0-macos was computed. net7.0-tvos was computed. net7.0-windows was computed. net8.0 was computed. net8.0-android was computed. net8.0-browser was computed. net8.0-ios was computed. net8.0-maccatalyst was computed. net8.0-macos was computed. net8.0-tvos was computed. net8.0-windows was computed. |
Compatible target framework(s)
Included target framework(s) (in package)
Learn more about Target Frameworks and .NET Standard.
-
net6.0
- AForgeBio (>= 1.5.0)
- BioFormats.NET6 (>= 7.1.0.2)
- BitMiracle.LibTiff.NET (>= 2.4.649)
- CS-Script (>= 4.8.14)
- NetVips (>= 2.4.0)
- NetVips.Native (>= 8.15.1)
- NetVips.Native.linux-arm64 (>= 8.15.1)
- NetVips.Native.linux-x64 (>= 8.15.1)
- NetVips.Native.osx-arm64 (>= 8.15.1)
- NetVips.Native.osx-x64 (>= 8.15.1)
- NetVips.Native.win-x64 (>= 8.15.1)
- Newtonsoft.Json (>= 13.0.3)
NuGet packages
This package is not used by any NuGet packages.
GitHub repositories
This package is not used by any popular GitHub repositories.
Version | Downloads | Last updated |
---|---|---|
2.4.0 | 62 | 5/2/2024 |
2.3.0 | 82 | 4/23/2024 |
2.2.1 | 96 | 2/17/2024 |
2.2.0 | 78 | 2/17/2024 |
2.1.0 | 110 | 2/10/2024 |
2.0.0 | 85 | 2/2/2024 |
1.9.0 | 146 | 12/24/2023 |
1.8.0 | 165 | 11/2/2023 |
1.7.0 | 375 | 9/1/2023 |
1.6.2 | 348 | 8/22/2023 |
1.6.1 | 324 | 8/19/2023 |
1.6.0 | 376 | 8/6/2023 |
1.5.2 | 393 | 8/2/2023 |
1.5.1 | 385 | 7/9/2023 |
1.5.0 | 348 | 7/8/2023 |
1.4.1 | 321 | 6/27/2023 |
1.4.0 | 286 | 5/15/2023 |
1.3.2 | 367 | 4/12/2023 |
1.3.1 | 415 | 4/1/2023 |
1.3.0 | 450 | 3/7/2023 |
1.2.1 | 483 | 3/4/2023 |
1.2.0 | 478 | 3/2/2023 |
1.1.1 | 477 | 3/2/2023 |
1.1.0 | 437 | 3/1/2023 |
1.0.0 | 222 | 3/1/2023 |
QuPath GeoJson ROI support, Bioformats Arm64 Support.