BioFSharp 2.0.0-beta3
See the version list below for details.
dotnet add package BioFSharp --version 2.0.0-beta3
NuGet\Install-Package BioFSharp -Version 2.0.0-beta3
<PackageReference Include="BioFSharp" Version="2.0.0-beta3" />
paket add BioFSharp --version 2.0.0-beta3
#r "nuget: BioFSharp, 2.0.0-beta3"
// Install BioFSharp as a Cake Addin
#addin nuget:?package=BioFSharp&version=2.0.0-beta3&prerelease
// Install BioFSharp as a Cake Tool
#tool nuget:?package=BioFSharp&version=2.0.0-beta3&prerelease
BioFSharp aims to be a user-friendly library for Bioinformatics written in F#.
This is the core package that contains optimized biological datastructures
(For example aminoacdis, nucleotides, and sequences consisting of them) and core
bioinformatic algorithms (such as alignments or pattern search). BioFSharp has many
more to offer in its subnamespaces, so be sure to check them out!
Product | Versions |
---|---|
.NET | net5.0 net5.0-windows net6.0 net6.0-android net6.0-ios net6.0-maccatalyst net6.0-macos net6.0-tvos net6.0-windows net7.0 net7.0-android net7.0-ios net7.0-maccatalyst net7.0-macos net7.0-tvos net7.0-windows |
.NET Core | netcoreapp2.0 netcoreapp2.1 netcoreapp2.2 netcoreapp3.0 netcoreapp3.1 |
.NET Standard | netstandard2.0 netstandard2.1 |
.NET Framework | net45 net451 net452 net46 net461 net462 net463 net47 net471 net472 net48 net481 |
MonoAndroid | monoandroid |
MonoMac | monomac |
MonoTouch | monotouch |
Tizen | tizen40 tizen60 |
Xamarin.iOS | xamarinios |
Xamarin.Mac | xamarinmac |
Xamarin.TVOS | xamarintvos |
Xamarin.WatchOS | xamarinwatchos |
-
- FSharp.Core (>= 4.7.0)
- FSharpAux (>= 1.0.0)
- FSharpAux.IO (>= 1.0.0)
NuGet packages (10)
Showing the top 5 NuGet packages that depend on BioFSharp:
Package | Downloads |
---|---|
BioFSharp.IO
Read/write functions for various biological file formats |
|
BioFSharp.ML
Machine learning with BioFSharp and CNTK.Net. |
|
BioFSharp.BioContainers
Open source bioinformatics and computational biology toolbox written in F#. |
|
BioFSharp.Parallel
GPU parallelized functions from BioFSharp |
|
BIO-BTE-06-L-7_Aux
Auxiliary functions for the course BIO-BTE-06-L-7 |
GitHub repositories
This package is not used by any popular GitHub repositories.
Version | Downloads | Last updated |
---|---|---|
2.0.0-preview.3 | 203 | 5/11/2022 |
2.0.0-preview.2 | 90 | 2/13/2022 |
2.0.0-preview.1 | 103 | 1/26/2022 |
2.0.0-beta7 | 240 | 9/29/2021 |
2.0.0-beta6 | 248 | 5/10/2021 |
2.0.0-beta5 | 606 | 2/16/2021 |
2.0.0-beta4 | 1,886 | 6/24/2020 |
2.0.0-beta3 | 481 | 6/22/2020 |
2.0.0-beta2 | 527 | 6/22/2020 |
2.0.0-beta1 | 500 | 5/6/2020 |
2.0.0-beta | 519 | 4/28/2020 |
1.2.1-beta2 | 495 | 4/28/2020 |
1.2.1-beta1 | 480 | 4/28/2020 |
1.2.0 | 1,703 | 3/30/2020 |
1.1.0 | 887 | 3/23/2020 |
1.0.3 | 889 | 2/26/2020 |
1.0.2 | 912 | 2/19/2020 |
(preview packages available on nuget)
Additions:**
BioFSharp**:
[Conversion extensions for BioCollections]()
BioFSharp.BioContainers**
BLAST biocontainer :
full blastn, blastn-short, megablast, and dc-megablast DSLs
full blastp, blastp-fast, and blastp-short DSLs
TargetP BioContainer :
Add functions to run the container with a mounted directory
BioFSharp.IO**:
OBO parser: Extended term parser for spec 1.4
Bugfixes:**
BioFSharp.IO**:
OBO parser now correctly parses lists of relationships
FastA.writeToStream is now correctly typed and doe snot close the stream after writing